Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf47 domain-containing protein | PHEP_RS00955 | Not Available | Negative | 222184 - 222825 | 23990.8 |
| sensor histidine kinase | PHEP_RS00960 | Not Available | Negative | 222913 - 223938 | 39486.8 |
| tigr03915 family putative dna repair protein | PHEP_RS00965 | Not Available | Negative | 223997 - 224761 | 30242.4 |
| putative dna modification/repair radical sam protein | PHEP_RS00970 | Not Available | Negative | 224765 - 226021 | 47660.8 |
| hd domain-containing protein | PHEP_RS00975 | Not Available | Negative | 226077 - 226712 | 23889.8 |
| thump domain-containing class i sam-dependent rna methyltransferase | PHEP_RS00980 | Not Available | Negative | 226725 - 227912 | 44529.6 |
| duf3127 domain-containing protein | PHEP_RS00985 | Not Available | Positive | 227985 - 228353 | 13656.9 |
| nuclear transport factor 2 family protein | PHEP_RS00990 | Not Available | Positive | 228486 - 228863 | 14019.0 |
| tonb-dependent receptor | PHEP_RS00995 | Not Available | Positive | 229101 - 231533 | 88730.6 |
| pepsy-associated tm helix domain-containing protein | PHEP_RS01000 | Not Available | Positive | 231539 - 232723 | 44403.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
