Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PHEP_RS22340 | Not Available | Positive | 2295932 - 2296324 | 14488.5 |
| fecr family protein | PHEP_RS09890 | Not Available | Positive | 2296296 - 2297117 | 29957.6 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS09895 | Not Available | Positive | 2297428 - 2300928 | 130984.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS09900 | Not Available | Positive | 2300945 - 2302303 | 50817.9 |
| tlpa family protein disulfide reductase | PHEP_RS09905 | Not Available | Positive | 2302335 - 2303840 | 57972.9 |
| protein-disulfide reductase dsbd domain-containing protein | PHEP_RS09910 | Not Available | Positive | 2303842 - 2304288 | 16858.7 |
| zinc-dependent metalloprotease | PHEP_RS09915 | Not Available | Positive | 2304372 - 2306981 | 98771.4 |
| helix-turn-helix domain-containing protein | PHEP_RS09920 | Not Available | Positive | 2307265 - 2307588 | 12495.5 |
| hypothetical protein | PHEP_RS09925 | Not Available | Positive | 2307751 - 2308173 | 16337.0 |
| hypothetical protein | PHEP_RS09930 | Not Available | Positive | 2308304 - 2308960 | 25579.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
