Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| threonine--trna ligase | PHEP_RS09485 | Not Available | Positive | 2203728 - 2205653 | 73139.2 |
| translation initiation factor if-3 | PHEP_RS09490 | Not Available | Positive | 2205667 - 2206236 | 21506.4 |
| 50s ribosomal protein l35 | PHEP_RS09495 | Not Available | Positive | 2206263 - 2206463 | 7363.27 |
| 50s ribosomal protein l20 | PHEP_RS09500 | Not Available | Positive | 2206538 - 2206882 | 12994.0 |
| dethiobiotin synthase | PHEP_RS09505 | Not Available | Negative | 2206946 - 2207560 | 22342.2 |
| aminotransferase class i/ii-fold pyridoxal phosphate-dependent enzyme | PHEP_RS09510 | Not Available | Negative | 2207553 - 2208686 | 41366.5 |
| xre family transcriptional regulator | PHEP_RS09515 | Not Available | Negative | 2208686 - 2209462 | 29501.3 |
| giy-yig nuclease family protein | PHEP_RS09520 | Not Available | Positive | 2209594 - 2209944 | 13629.6 |
| basic secretory protein-like protein | PHEP_RS09525 | Not Available | Negative | 2210067 - 2213249 | 119554.0 |
| transglycosylase domain-containing protein | PHEP_RS09530 | Not Available | Negative | 2213341 - 2215788 | 93399.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
