Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3857 domain-containing protein | PHEP_RS09385 | Not Available | Negative | 2178130 - 2180043 | 72186.8 |
| transglutaminase domain-containing protein | PHEP_RS09390 | Not Available | Negative | 2180044 - 2182014 | 74895.2 |
| 3'-5' exonuclease | PHEP_RS09395 | Not Available | Positive | 2182184 - 2183170 | 38020.4 |
| m1 family metallopeptidase | PHEP_RS09400 | Not Available | Positive | 2183182 - 2185050 | 70832.2 |
| trna epoxyqueuosine(34) reductase queg | PHEP_RS09405 | Not Available | Negative | 2185059 - 2185997 | 36065.2 |
| hypothetical protein | PHEP_RS09410 | Not Available | Positive | 2186075 - 2186293 | 8135.71 |
| bifunctional gnat family n-acetyltransferase/carbon-nitrogen hydrolase family protein | PHEP_RS09415 | Not Available | Negative | 2186307 - 2187812 | 57820.0 |
| holliday junction branch migration dna helicase ruvb | PHEP_RS09420 | Not Available | Negative | 2187866 - 2188888 | 37484.2 |
| 3-hydroxybutyryl-coa dehydrogenase | PHEP_RS09425 | Not Available | Negative | 2188917 - 2189816 | 32088.3 |
| pyridoxamine 5'-phosphate oxidase | PHEP_RS09430 | Not Available | Negative | 2189850 - 2190503 | 24777.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
