Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | PHEP_RS09245 | Not Available | Positive | 2146284 - 2148662 | 89330.8 |
| 3-phosphoserine/phosphohydroxythreonine transaminase | PHEP_RS09250 | Not Available | Positive | 2148713 - 2149777 | 38869.0 |
| d-2-hydroxyacid dehydrogenase | PHEP_RS09255 | Not Available | Positive | 2149789 - 2150739 | 33747.9 |
| duf1015 domain-containing protein | PHEP_RS09260 | Not Available | Positive | 2150806 - 2152050 | 47031.7 |
| hypothetical protein | PHEP_RS22210 | Not Available | Negative | 2152047 - 2152190 | 5527.16 |
| hypothetical protein | PHEP_RS09265 | Not Available | Negative | 2152187 - 2152696 | 19503.8 |
| sam hydrolase/sam-dependent halogenase family protein | PHEP_RS09270 | Not Available | Negative | 2152737 - 2153516 | 29335.6 |
| phoh family protein | PHEP_RS09275 | Not Available | Positive | 2153619 - 2154587 | 35651.3 |
| phosphoribosylaminoimidazolesuccinocarboxamide synthase | PHEP_RS09280 | Not Available | Positive | 2154593 - 2155543 | 35827.8 |
| stas domain-containing protein | PHEP_RS09285 | Not Available | Positive | 2155623 - 2156009 | 14350.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
