Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pasta domain-containing protein | PHEP_RS09195 | Not Available | Negative | 2136793 - 2137557 | 27470.2 |
| d-alanine--d-alanine ligase | PHEP_RS09200 | Not Available | Positive | 2137723 - 2138709 | 36188.5 |
| duf3575 domain-containing protein | PHEP_RS09205 | Not Available | Negative | 2138778 - 2139548 | 28143.6 |
| crp/fnr family transcriptional regulator | PHEP_RS09210 | Not Available | Positive | 2139676 - 2140263 | 22476.8 |
| hypothetical protein | PHEP_RS09215 | Not Available | Positive | 2140322 - 2140708 | 14679.2 |
| mate family efflux transporter | PHEP_RS09220 | Not Available | Negative | 2140698 - 2142125 | 51565.8 |
| acyl-coa thioesterase | PHEP_RS09225 | Not Available | Negative | 2142312 - 2142731 | 16297.7 |
| 30s ribosomal protein s15 | PHEP_RS09230 | Not Available | Positive | 2142853 - 2143131 | 10677.2 |
| polyribonucleotide nucleotidyltransferase | PHEP_RS09235 | Not Available | Positive | 2143281 - 2145431 | 77894.8 |
| ribulose-phosphate 3-epimerase | PHEP_RS09240 | Not Available | Positive | 2145588 - 2146262 | 23906.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
