Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alpha/beta hydrolase | PHEP_RS08990 | Not Available | Positive | 2104875 - 2105720 | 30764.6 |
| maue/doxx family redox-associated membrane protein | PHEP_RS08995 | Not Available | Positive | 2105724 - 2106158 | 16261.6 |
| hypothetical protein | PHEP_RS09000 | Not Available | Positive | 2106213 - 2106503 | 10536.6 |
| hypothetical protein | PHEP_RS09005 | Not Available | Positive | 2106547 - 2107572 | 38085.4 |
| helix-turn-helix domain-containing protein | PHEP_RS21595 | Not Available | Positive | 2107584 - 2108036 | 17748.8 |
| pas domain s-box protein | PHEP_RS21600 | Not Available | Negative | 2108001 - 2110490 | 92963.7 |
| aminotransferase class v-fold plp-dependent enzyme | PHEP_RS09020 | Not Available | Positive | 2110828 - 2112015 | 43168.7 |
| duf1016 n-terminal domain-containing protein | PHEP_RS21605 | Not Available | Positive | 2112252 - 2112548 | 11739.9 |
| hypothetical protein | PHEP_RS09035 | Not Available | Positive | 2112708 - 2112953 | 9492.18 |
| type ii toxin-antitoxin system rele/pare family toxin | PHEP_RS09040 | Not Available | Positive | 2112953 - 2113252 | 11924.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
