Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 4-fold beta flower protein | PHEP_RS08940 | Not Available | Positive | 2088243 - 2088602 | 13606.7 |
| sir2 family protein | PHEP_RS08945 | Not Available | Negative | 2088604 - 2089683 | 41826.6 |
| piwi domain-containing protein | PHEP_RS08950 | Not Available | Negative | 2089685 - 2091541 | 70787.5 |
| rna polymerase sigma-70 factor | PHEP_RS08955 | Not Available | Positive | 2092160 - 2092726 | 22227.6 |
| fecr family protein | PHEP_RS08960 | Not Available | Positive | 2092795 - 2093952 | 42885.2 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS08965 | Not Available | Positive | 2094195 - 2097578 | 124056.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS08970 | Not Available | Positive | 2097590 - 2099044 | 54249.4 |
| thioredoxin family protein | PHEP_RS21590 | Not Available | Positive | 2099199 - 2100989 | 67940.7 |
| amidohydrolase family protein | PHEP_RS08980 | Not Available | Positive | 2100989 - 2104147 | 116538.0 |
| duf4397 domain-containing protein | PHEP_RS08985 | Not Available | Positive | 2104159 - 2104851 | 24409.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
