Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| c-type cytochrome | PHEP_RS08475 | Not Available | Positive | 2002366 - 2002722 | 12418.3 |
| gfo/idh/moca family protein | PHEP_RS08480 | Not Available | Positive | 2003073 - 2004089 | 36272.7 |
| gfo/idh/moca family protein | PHEP_RS08485 | Not Available | Positive | 2004098 - 2005453 | 50040.3 |
| sugar mfs transporter | PHEP_RS08490 | Not Available | Positive | 2005463 - 2006797 | 48782.9 |
| putative oxidoreductase c-terminal domain-containing protein | PHEP_RS08495 | Not Available | Positive | 2006882 - 2008207 | 50175.9 |
| n-acetylglucosamine-6-phosphate deacetylase | PHEP_RS08500 | Not Available | Positive | 2008320 - 2009546 | 44373.5 |
| glucosamine-6-phosphate deaminase | PHEP_RS08505 | Not Available | Positive | 2009555 - 2010313 | 28520.5 |
| substrate-binding domain-containing protein | PHEP_RS08510 | Not Available | Positive | 2010435 - 2011499 | 40598.9 |
| pas domain s-box protein | PHEP_RS21565 | Not Available | Positive | 2011667 - 2014594 | 110311.0 |
| dna ligase d | PHEP_RS08520 | Not Available | Positive | 2014770 - 2017403 | 99767.7 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
