Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii polyketide synthase | PHEP_RS08220 | Not Available | Negative | 1942713 - 1943765 | 38891.5 |
| methyltransferase domain-containing protein | PHEP_RS08225 | Not Available | Negative | 1943762 - 1944235 | 18429.5 |
| hypothetical protein | PHEP_RS22320 | Not Available | Negative | 1944207 - 1944479 | 9864.09 |
| nad(p)/fad-dependent oxidoreductase | PHEP_RS08230 | Not Available | Negative | 1944476 - 1945612 | 41852.2 |
| type ix secretion system membrane protein porp/sprf | PHEP_RS08235 | Not Available | Negative | 1945664 - 1946650 | 36656.8 |
| t9ss c-terminal target domain-containing protein | PHEP_RS08240 | Not Available | Negative | 1946663 - 1947610 | 34107.5 |
| hypothetical protein | PHEP_RS08245 | Not Available | Negative | 1947639 - 1948343 | 24429.8 |
| immunoglobulin domain-containing protein | PHEP_RS08250 | Not Available | Negative | 1948365 - 1950587 | 76639.0 |
| plp-dependent aminotransferase family protein | PHEP_RS08255 | Not Available | Negative | 1950906 - 1952375 | 55953.9 |
| cbs domain-containing protein | PHEP_RS08260 | Not Available | Positive | 1952564 - 1952854 | 10701.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
