Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fadr/gntr family transcriptional regulator | PHEP_RS08015 | Not Available | Positive | 1897759 - 1898427 | 24934.4 |
| mfs transporter | PHEP_RS08020 | Not Available | Positive | 1898457 - 1899683 | 44348.4 |
| xylose isomerase | PHEP_RS08025 | Not Available | Negative | 1899723 - 1901051 | 49838.5 |
| xylulokinase | PHEP_RS08030 | Not Available | Negative | 1901080 - 1902552 | 53339.7 |
| gfo/idh/moca family protein | PHEP_RS08035 | Not Available | Positive | 1902779 - 1904086 | 47842.1 |
| 3-keto-disaccharide hydrolase | PHEP_RS08040 | Not Available | Positive | 1904107 - 1904811 | 26002.4 |
| fasciclin domain-containing protein | PHEP_RS08045 | Not Available | Positive | 1904929 - 1907025 | 74696.9 |
| plp-dependent cysteine synthase family protein | PHEP_RS08050 | Not Available | Positive | 1907272 - 1908321 | 37904.1 |
| protein-disulfide reductase dsbd family protein | PHEP_RS08055 | Not Available | Positive | 1908330 - 1910033 | 61197.9 |
| beta-ketoacyl-acp synthase ii | PHEP_RS08060 | Not Available | Positive | 1910295 - 1911548 | 43762.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
