Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase factor sigma-54 | PHEP_RS07670 | Not Available | Negative | 1819632 - 1821104 | 56691.3 |
| porin family protein | PHEP_RS07675 | Not Available | Positive | 1821342 - 1822085 | 26859.3 |
| hypothetical protein | PHEP_RS07680 | Not Available | Positive | 1822125 - 1822745 | 23295.8 |
| pig-l deacetylase family protein | PHEP_RS07685 | Not Available | Positive | 1823017 - 1823658 | 24761.7 |
| glycosyltransferase family 4 protein | PHEP_RS07690 | Not Available | Positive | 1823655 - 1824797 | 42382.5 |
| glycoside hydrolase 100 family protein | PHEP_RS07695 | Not Available | Positive | 1824808 - 1825980 | 44823.7 |
| large conductance mechanosensitive channel protein mscl | PHEP_RS07700 | Not Available | Positive | 1826074 - 1826505 | 15204.1 |
| liaf transmembrane domain-containing protein | PHEP_RS07705 | Not Available | Positive | 1826738 - 1827523 | 29008.8 |
| duf4288 domain-containing protein | PHEP_RS07710 | Not Available | Positive | 1827535 - 1827900 | 13820.4 |
| sensor histidine kinase | PHEP_RS07715 | Not Available | Positive | 1827897 - 1828958 | 40536.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
