Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | PHEP_RS07525 | Not Available | Positive | 1784213 - 1785256 | 39757.8 |
| sgnh/gdsl hydrolase family protein | PHEP_RS07530 | Not Available | Positive | 1785261 - 1786349 | 40198.6 |
| hypothetical protein | PHEP_RS07535 | Not Available | Positive | 1786360 - 1787649 | 48511.6 |
| Tmrna,resume consensus sequence (at 89): tataattggcgaaaataa | Not Available | Not Available | Positive | 1787708 - 1788072 | Not Available |
| pyridoxal phosphate-dependent aminotransferase | PHEP_RS07540 | Not Available | Negative | 1788143 - 1789345 | 44206.2 |
| duf1573 domain-containing protein | PHEP_RS07545 | Not Available | Negative | 1789480 - 1789872 | 13982.1 |
| alpha-ketoacid dehydrogenase subunit alpha/beta | PHEP_RS07550 | Not Available | Positive | 1790007 - 1792427 | 89419.1 |
| chorismate synthase | PHEP_RS07555 | Not Available | Negative | 1792458 - 1793546 | 38788.1 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | PHEP_RS07560 | Not Available | Negative | 1793580 - 1794839 | 46314.9 |
| chorismate mutase | PHEP_RS07565 | Not Available | Negative | 1794842 - 1795981 | 41757.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
