Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide deacetylase family protein | PHEP_RS07260 | Not Available | Negative | 1723182 - 1724081 | 33797.5 |
| outer membrane beta-barrel protein | PHEP_RS07265 | Not Available | Negative | 1724250 - 1724855 | 21442.5 |
| glycoside hydrolase family 130 protein | PHEP_RS07270 | Not Available | Positive | 1725232 - 1726710 | 56375.8 |
| glycosyltransferase family 4 protein | PHEP_RS07275 | Not Available | Negative | 1726745 - 1729024 | 86644.5 |
| atp-dependent chaperone clpb | PHEP_RS07280 | Not Available | Negative | 1729292 - 1731886 | 97276.5 |
| duf1801 domain-containing protein | PHEP_RS07285 | Not Available | Positive | 1732139 - 1732483 | 13614.0 |
| mfs transporter | PHEP_RS07290 | Not Available | Positive | 1732490 - 1733707 | 44853.1 |
| heparinase ii/iii domain-containing protein | PHEP_RS07295 | Not Available | Negative | 1733715 - 1735595 | 70237.7 |
| arsr/smtb family transcription factor | PHEP_RS07300 | Not Available | Positive | 1735691 - 1735993 | 11529.8 |
| nadh:flavin oxidoreductase | PHEP_RS07305 | Not Available | Positive | 1736013 - 1737113 | 40554.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
