Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamine--fructose-6-phosphate transaminase (isomerizing) | PHEP_RS00660 | Not Available | Negative | 156336 - 158174 | 67662.7 |
| duf4270 domain-containing protein | PHEP_RS00665 | Not Available | Negative | 158258 - 159715 | 52544.7 |
| glycogen/starch synthase | PHEP_RS00670 | Not Available | Negative | 159739 - 160563 | 31607.9 |
| pantoate--beta-alanine ligase | PHEP_RS00675 | Not Available | Positive | 160716 - 161555 | 31073.1 |
| aspartate 1-decarboxylase | PHEP_RS00680 | Not Available | Positive | 161600 - 161950 | 12975.8 |
| acyl-coa dehydrogenase | PHEP_RS00685 | Not Available | Positive | 162047 - 163186 | 41604.1 |
| phage holin family protein | PHEP_RS00690 | Not Available | Negative | 163377 - 163724 | 12233.8 |
| hypothetical protein | PHEP_RS00695 | Not Available | Positive | 163743 - 164177 | 15893.3 |
| ribosome assembly cofactor rimp | PHEP_RS00700 | Not Available | Positive | 164414 - 164878 | 17365.2 |
| transcription termination factor nusa | PHEP_RS00705 | Not Available | Positive | 164881 - 166116 | 46782.8 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
