Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sigma-70 family rna polymerase sigma factor | PHEP_RS06870 | Not Available | Positive | 1633318 - 1634178 | 32607.7 |
| alpha-ketoglutarate-dependent dioxygenase alkb family protein | PHEP_RS06875 | Not Available | Positive | 1634191 - 1634796 | 23460.1 |
| tetr/acrr family transcriptional regulator | PHEP_RS06880 | Not Available | Positive | 1634891 - 1635490 | 22807.6 |
| doxx family protein | PHEP_RS06885 | Not Available | Positive | 1635505 - 1635936 | 15687.7 |
| lea type 2 family protein | PHEP_RS06890 | Not Available | Positive | 1635980 - 1636579 | 21346.4 |
| pig-l family deacetylase | PHEP_RS06895 | Not Available | Positive | 1636686 - 1639121 | 89183.9 |
| hypothetical protein | PHEP_RS22165 | Not Available | Positive | 1639133 - 1639273 | 5778.13 |
| sodium:solute symporter | PHEP_RS06900 | Not Available | Positive | 1639270 - 1640958 | 62457.2 |
| rna polymerase sigma factor | PHEP_RS06905 | Not Available | Positive | 1641139 - 1641744 | 23579.7 |
| fecr family protein | PHEP_RS06910 | Not Available | Positive | 1641812 - 1643008 | 44682.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
