Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sensor histidine kinase | PHEP_RS06665 | Not Available | Positive | 1587067 - 1588305 | 47356.2 |
| lysr substrate-binding domain-containing protein | PHEP_RS06670 | Not Available | Negative | 1588289 - 1589212 | 35473.4 |
| histidine ammonia-lyase | PHEP_RS06675 | Not Available | Positive | 1589289 - 1590866 | 56989.2 |
| urocanate hydratase | PHEP_RS06680 | Not Available | Positive | 1590869 - 1592869 | 73380.4 |
| cation diffusion facilitator family transporter | PHEP_RS06685 | Not Available | Positive | 1592915 - 1593808 | 32901.4 |
| glycerophosphodiester phosphodiesterase | PHEP_RS06690 | Not Available | Negative | 1593792 - 1594667 | 33397.9 |
| sdr family nad(p)-dependent oxidoreductase | PHEP_RS06695 | Not Available | Positive | 1594912 - 1595724 | 28122.9 |
| phosphatase pap2 family protein | PHEP_RS06700 | Not Available | Positive | 1595787 - 1596536 | 26888.4 |
| efflux rnd transporter permease subunit | PHEP_RS06705 | Not Available | Negative | 1596549 - 1599668 | 115739.0 |
| efflux rnd transporter periplasmic adaptor subunit | PHEP_RS06710 | Not Available | Negative | 1599696 - 1600793 | 40617.8 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
