Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS06415 | Not Available | Positive | 1517012 - 1518853 | 67787.6 |
| duf5017 domain-containing protein | PHEP_RS06420 | Not Available | Positive | 1518876 - 1519838 | 35000.2 |
| dnrlre domain-containing protein | PHEP_RS06425 | Not Available | Positive | 1520048 - 1521568 | 55564.7 |
| hypothetical protein | PHEP_RS06430 | Not Available | Positive | 1521648 - 1522088 | 16164.2 |
| gfo/idh/moca family oxidoreductase | PHEP_RS06435 | Not Available | Positive | 1522251 - 1523636 | 51715.1 |
| srpbcc family protein | PHEP_RS06440 | Not Available | Positive | 1523925 - 1524374 | 17021.2 |
| glycoside hydrolase family 88/105 protein | PHEP_RS06445 | Not Available | Negative | 1524437 - 1525555 | 42820.6 |
| sdr family oxidoreductase | PHEP_RS06450 | Not Available | Negative | 1525555 - 1526367 | 28559.5 |
| sialate o-acetylesterase | PHEP_RS06455 | Not Available | Negative | 1526429 - 1527820 | 51270.1 |
| glycoside hydrolase family 2 tim barrel-domain containing protein | PHEP_RS06460 | Not Available | Positive | 1528081 - 1530687 | 99088.6 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
