Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| beta-l-arabinofuranosidase domain-containing protein | PHEP_RS06265 | Not Available | Positive | 1478848 - 1480902 | 77769.3 |
| thioredoxin family protein | PHEP_RS06270 | Not Available | Negative | 1480942 - 1482315 | 52229.6 |
| srpbcc family protein | PHEP_RS06275 | Not Available | Positive | 1482539 - 1482988 | 16686.2 |
| hypothetical protein | PHEP_RS06280 | Not Available | Positive | 1483191 - 1483733 | 20306.5 |
| cation:proton antiporter | PHEP_RS06285 | Not Available | Positive | 1483752 - 1485917 | 79671.6 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS06290 | Not Available | Positive | 1486322 - 1489642 | 122445.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS06295 | Not Available | Positive | 1489675 - 1491732 | 75297.8 |
| eve domain-containing protein | PHEP_RS06300 | Not Available | Positive | 1491999 - 1492418 | 16069.1 |
| acyl-coa thioesterase | PHEP_RS06305 | Not Available | Negative | 1492444 - 1492968 | 19398.5 |
| alpha-amylase | PHEP_RS06310 | Not Available | Positive | 1493089 - 1494573 | 56756.5 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
