Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| valine--trna ligase | PHEP_RS06215 | Not Available | Positive | 1464558 - 1467221 | 101750.0 |
| n-acetylmuramoyl-l-alanine amidase family protein | PHEP_RS06220 | Not Available | Positive | 1467227 - 1468210 | 37075.5 |
| helix-turn-helix transcriptional regulator | PHEP_RS06225 | Not Available | Negative | 1468215 - 1468805 | 21946.4 |
| efflux rnd transporter periplasmic adaptor subunit | PHEP_RS06230 | Not Available | Positive | 1469092 - 1470237 | 41243.8 |
| efflux rnd transporter permease subunit | PHEP_RS06235 | Not Available | Positive | 1470269 - 1473403 | 113237.0 |
| efflux transporter outer membrane subunit | PHEP_RS06240 | Not Available | Positive | 1473434 - 1474816 | 50914.0 |
| type i restriction enzyme hsdr n-terminal domain-containing protein | PHEP_RS06245 | Not Available | Negative | 1475195 - 1475656 | 17984.0 |
| dna polymerase iii subunit delta | PHEP_RS06250 | Not Available | Positive | 1475713 - 1476738 | 39102.5 |
| duf4230 domain-containing protein | PHEP_RS06255 | Not Available | Negative | 1476722 - 1477309 | 21955.1 |
| sialidase family protein | PHEP_RS06260 | Not Available | Positive | 1477551 - 1478864 | 49244.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
