Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aldo/keto reductase | PHEP_RS06165 | Not Available | Negative | 1453019 - 1453972 | 35562.0 |
| trna (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase mnmd | PHEP_RS06170 | Not Available | Negative | 1453997 - 1454677 | 25335.2 |
| hypothetical protein | PHEP_RS06175 | Not Available | Negative | 1454708 - 1455013 | 11484.9 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase family protein | PHEP_RS06180 | Not Available | Positive | 1455227 - 1455943 | 27450.6 |
| aldehyde dehydrogenase family protein | PHEP_RS06185 | Not Available | Positive | 1455940 - 1457304 | 50479.3 |
| m13 family metallopeptidase | PHEP_RS06190 | Not Available | Negative | 1457312 - 1459348 | 76273.9 |
| dmt family transporter | PHEP_RS06195 | Not Available | Negative | 1459599 - 1460471 | 32429.7 |
| s9 family peptidase | PHEP_RS06200 | Not Available | Positive | 1460548 - 1462713 | 81504.0 |
| fecr family protein | PHEP_RS06205 | Not Available | Positive | 1462813 - 1463928 | 42422.6 |
| rna polymerase sigma factor | PHEP_RS06210 | Not Available | Positive | 1463930 - 1464493 | 21647.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
