Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadp-specific glutamate dehydrogenase | PHEP_RS06065 | Not Available | Negative | 1432464 - 1433804 | 49299.5 |
| rna polymerase sigma factor | PHEP_RS06070 | Not Available | Negative | 1433920 - 1435146 | 47247.2 |
| ycii family protein | PHEP_RS06075 | Not Available | Negative | 1435192 - 1435530 | 11965.1 |
| carboxymuconolactone decarboxylase family protein | PHEP_RS06080 | Not Available | Negative | 1435585 - 1436058 | 17895.4 |
| nadph-dependent fmn reductase | PHEP_RS06085 | Not Available | Positive | 1436231 - 1436788 | 20853.1 |
| 1-aminocyclopropane-1-carboxylate deaminase/d-cysteine desulfhydrase | PHEP_RS06090 | Not Available | Negative | 1436790 - 1437662 | 31958.8 |
| rlua family pseudouridine synthase | PHEP_RS06095 | Not Available | Positive | 1437991 - 1439019 | 39061.6 |
| aminotransferase class iv | PHEP_RS06100 | Not Available | Positive | 1439037 - 1439873 | 31651.5 |
| methionyl-trna formyltransferase | PHEP_RS06105 | Not Available | Negative | 1439895 - 1440809 | 33615.8 |
| dna topoisomerase ib | PHEP_RS06110 | Not Available | Positive | 1440870 - 1441919 | 39662.2 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
