Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | PHEP_RS05965 | Not Available | Positive | 1412043 - 1412453 | 15265.8 |
| lipid a deacylase lpxr family protein | PHEP_RS05970 | Not Available | Negative | 1412473 - 1413423 | 35281.6 |
| endopeptidase la | PHEP_RS05975 | Not Available | Negative | 1413420 - 1415879 | 91896.5 |
| tetratricopeptide repeat protein | PHEP_RS05980 | Not Available | Positive | 1416143 - 1416769 | 23506.3 |
| hypothetical protein | PHEP_RS05985 | Not Available | Negative | 1416780 - 1417307 | 20129.5 |
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | PHEP_RS05990 | Not Available | Negative | 1417307 - 1418827 | 55512.9 |
| duf4783 domain-containing protein | PHEP_RS05995 | Not Available | Positive | 1418963 - 1419358 | 14903.1 |
| carboxylating nicotinate-nucleotide diphosphorylase | PHEP_RS06000 | Not Available | Positive | 1419395 - 1420237 | 30362.8 |
| glycerol-3-phosphate 1-o-acyltransferase plsy | PHEP_RS06005 | Not Available | Positive | 1420241 - 1420888 | 23182.1 |
| m48 family metallopeptidase | PHEP_RS06010 | Not Available | Positive | 1420898 - 1421725 | 29911.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
