Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rhamnogalacturonan acetylesterase | PHEP_RS05760 | Not Available | Positive | 1358196 - 1358996 | 30566.6 |
| pectinesterase family protein | PHEP_RS05765 | Not Available | Positive | 1358998 - 1359966 | 35713.1 |
| glycoside hydrolase family 28 protein | PHEP_RS05770 | Not Available | Positive | 1360081 - 1361745 | 60760.2 |
| pectate lyase | PHEP_RS05775 | Not Available | Positive | 1361764 - 1362828 | 39817.6 |
| tagaturonate reductase | PHEP_RS05780 | Not Available | Positive | 1363008 - 1364525 | 55884.2 |
| uxaa family hydrolase | PHEP_RS05785 | Not Available | Positive | 1364522 - 1366174 | 59361.7 |
| glucuronate isomerase | PHEP_RS05790 | Not Available | Positive | 1366206 - 1367606 | 53753.6 |
| 16s ribosomal rna | Not Available | Not Available | Positive | 1368493 - 1370014 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 1370191 - 1370265 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 1370284 - 1370360 | Not Available |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
