Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | PHEP_RS05615 | Not Available | Positive | 1316202 - 1319330 | 114439.0 |
| hypothetical protein | PHEP_RS22160 | Not Available | Positive | 1319351 - 1319488 | 5084.25 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS05620 | Not Available | Positive | 1319499 - 1321205 | 64150.9 |
| amidohydrolase family protein | PHEP_RS05625 | Not Available | Positive | 1321237 - 1322217 | 36578.8 |
| 3-keto-disaccharide hydrolase | PHEP_RS05630 | Not Available | Positive | 1322273 - 1322995 | 27287.3 |
| mgh1-like glycoside hydrolase domain-containing protein | PHEP_RS05635 | Not Available | Positive | 1323008 - 1325752 | 103441.0 |
| atp-dependent clp protease atp-binding subunit | PHEP_RS05640 | Not Available | Positive | 1326138 - 1328678 | 94591.3 |
| formylglycine-generating enzyme family protein | PHEP_RS05645 | Not Available | Positive | 1328897 - 1329862 | 36494.4 |
| gfo/idh/moca family protein | PHEP_RS05650 | Not Available | Positive | 1329901 - 1331229 | 48983.1 |
| fad:protein fmn transferase | PHEP_RS05655 | Not Available | Positive | 1331281 - 1332246 | 35356.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
