Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix domain-containing protein | PHEP_RS05565 | Not Available | Positive | 1300433 - 1300651 | 8085.74 |
| hypothetical protein | PHEP_RS05570 | Not Available | Positive | 1300839 - 1301231 | 15296.0 |
| energy-dependent translational throttle protein etta | PHEP_RS05575 | Not Available | Negative | 1301318 - 1302994 | 62819.7 |
| hypothetical protein | PHEP_RS05580 | Not Available | Positive | 1303456 - 1304658 | 43155.4 |
| fecr family protein | PHEP_RS05585 | Not Available | Positive | 1304885 - 1306033 | 42222.5 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS05590 | Not Available | Positive | 1306052 - 1309489 | 126351.0 |
| rna polymerase sigma factor | PHEP_RS05595 | Not Available | Positive | 1309606 - 1310190 | 22534.6 |
| hypothetical protein | PHEP_RS05600 | Not Available | Positive | 1310420 - 1311463 | 38062.5 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS05605 | Not Available | Positive | 1311514 - 1314375 | 104841.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS05610 | Not Available | Positive | 1314395 - 1316140 | 63612.3 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
