Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidase t | PHEP_RS00505 | Not Available | Positive | 109854 - 111107 | 45609.1 |
| class i sam-dependent methyltransferase | PHEP_RS00510 | Not Available | Negative | 111112 - 111810 | 26274.5 |
| mbl fold metallo-hydrolase rna specificity domain-containing protein | PHEP_RS00515 | Not Available | Negative | 111829 - 113226 | 52024.6 |
| ytxh domain-containing protein | PHEP_RS00520 | Not Available | Negative | 113253 - 113459 | 7209.77 |
| hypothetical protein | PHEP_RS00525 | Not Available | Negative | 113619 - 114032 | 15024.8 |
| helix-turn-helix domain-containing protein | PHEP_RS00530 | Not Available | Positive | 114607 - 115791 | 44882.6 |
| t9ss c-terminal target domain-containing protein | PHEP_RS22010 | Not Available | Positive | 115925 - 130615 | 491745.0 |
| type ix secretion system membrane protein porp/sprf | PHEP_RS00540 | Not Available | Positive | 130624 - 131595 | 35680.9 |
| ompa family protein | PHEP_RS00545 | Not Available | Positive | 131624 - 133381 | 65838.4 |
| 50s ribosomal protein l13 | PHEP_RS00550 | Not Available | Positive | 133538 - 133981 | 16257.0 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
