Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| family 16 glycoside hydrolase | PHEP_RS05115 | Not Available | Positive | 1196373 - 1197920 | 57945.4 |
| gfo/idh/moca family protein | PHEP_RS05120 | Not Available | Positive | 1197980 - 1199161 | 43677.6 |
| mfs transporter | PHEP_RS05125 | Not Available | Positive | 1199203 - 1200498 | 47900.3 |
| putative oxidoreductase c-terminal domain-containing protein | PHEP_RS05130 | Not Available | Positive | 1200501 - 1201895 | 52391.9 |
| gfo/idh/moca family protein | PHEP_RS05135 | Not Available | Positive | 1201885 - 1202898 | 37796.1 |
| cupin domain-containing protein | PHEP_RS05140 | Not Available | Positive | 1202909 - 1203271 | 13444.8 |
| glcg/hbps family heme-binding protein | PHEP_RS05145 | Not Available | Positive | 1203255 - 1203749 | 18332.2 |
| hypothetical protein | PHEP_RS05150 | Not Available | Positive | 1203760 - 1204122 | 13237.3 |
| ldh family oxidoreductase | PHEP_RS05155 | Not Available | Positive | 1204103 - 1205197 | 39416.4 |
| alpha-ketoglutarate-dependent dioxygenase alkb family protein | PHEP_RS05160 | Not Available | Positive | 1205334 - 1205942 | 22886.5 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
