Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter heparinus |
| Strain | DSM 2366 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Bacilli |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobic |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Terrestrial |
| Biotic relationship | Free living |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Nonsporulating |
| Energy source | Chemoorganotroph |
| Pathogenicity | No |
Gene Summary
Adenine Count
1491779 bp
Thymine Count
1502777 bp
Guanine Count
1083931 bp
Cytosine Count
1088896 bp
Genome Length
5167383 bp
Protein-coding Genes
4228 genes
Non-Coding Genes
57 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lyse family translocator | PHEP_RS04965 | Not Available | Negative | 1158644 - 1159270 | 23477.7 |
| deoxycytidylate deaminase | PHEP_RS04970 | Not Available | Positive | 1159431 - 1159853 | 15039.8 |
| glutamine-hydrolyzing gmp synthase | PHEP_RS04975 | Not Available | Positive | 1159862 - 1161388 | 56057.4 |
| abc transporter substrate-binding protein | PHEP_RS04980 | Not Available | Positive | 1161345 - 1162568 | 45987.4 |
| rna methyltransferase | PHEP_RS04985 | Not Available | Positive | 1162565 - 1163728 | 44697.7 |
| marc family protein | PHEP_RS04990 | Not Available | Negative | 1163735 - 1164304 | 20576.2 |
| susc/raga family tonb-linked outer membrane protein | PHEP_RS04995 | Not Available | Positive | 1164546 - 1167485 | 107781.0 |
| ragb/susd family nutrient uptake outer membrane protein | PHEP_RS05000 | Not Available | Positive | 1167502 - 1169136 | 60821.4 |
| hypothetical protein | PHEP_RS05005 | Not Available | Positive | 1169251 - 1169457 | 7720.61 |
| amino acid permease | PHEP_RS05010 | Not Available | Negative | 1169542 - 1171242 | 60986.1 |
Pathways
429 pathways
Health Effects
No health effects information available for this bacterium.
