Methylorubrum extorquens DM4

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens DM4 is a Gram-negative, rod-shaped bacterium that exhibits a unique metabolic capability as a methylotroph, utilizing methanol and other one-carbon compounds as its primary energy source. This organism can be found in diverse habitats, indicating its adaptability to various environmental conditions. M. extorquens DM4 typically exists in pairs or as single cells, which may influence its interactions within microbial communities. The optimal growth temperature for M. extorquens DM4 is 25.0°C, suggesting a preference for moderate environmental temperatures, typical of many soil and aquatic microorganisms. As a facultative aerobe, this bacterium can thrive in both the presence and absence of oxygen, allowing it to exploit different niches and resources in its habitat. This metabolic versatility not only enhances its survival under fluctuating environmental conditions but may also play a role in biogeochemical cycles, particularly in carbon cycling. The ability of M. extorquens DM4 to utilize methanol as an energy source positions it as a potential player in biotechnological applications, such as bioremediation and sustainable biofuel production. Furthermore, its presence in multiple habitats underscores the ecological significance of methylotrophic bacteria in carbon fixation and their potential contributions to ecosystem dynamics in varying environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens DM4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens DM4


Gene Summary

Adenine Count

7178 bp

Thymine Count

6812 bp

Guanine Count

12476 bp

Cytosine Count

12113 bp

Genome Length

38579 bp

Protein-coding Genes

38 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
acetate/propionate family kinaseMETD_RS28050Not Available+1031 - 220642797.5
hypothetical proteinMETD_RS30845Not Available-2379 - 276514113.7
arac family transcriptional regulatorMETD_RS28055Not Available-3132 - 409734611.9
hypothetical proteinMETD_RS28060Not Available+4282 - 474317006.9
duf2380 domain-containing proteinMETD_RS28065Not Available+4743 - 533921345.0
homoserine kinaseMETD_RS28070Not Available-5606 - 651732968.4
recombinase family proteinMETD_RS28075Not Available+6731 - 731521616.2
hypothetical proteinMETD_RS28080Not Available+7320 - 776016950.3
hypothetical proteinMETD_RS28085Not Available+7931 - 859624963.8
duf3800 domain-containing proteinMETD_RS28090Not Available+8957 - 973329685.9

Displaying genes 1 – 10 of 38 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1715 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1715 metabolites