Methylorubrum extorquens DM4

Gram-negativeRodMotileFacultative aerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum extorquens DM4 is a facultative aerobic, gram-negative bacterium that exhibits a rod shape and is motile, possessing flagella. This organism is classified as a methylotroph, utilizing methanol and other one-carbon compounds as its primary energy source. It typically thrives at an optimal temperature of 25°C and is categorized as mesophilic, indicating its growth is favored in moderate temperature ranges. Methylorubrum extorquens DM4 exhibits a unique cell arrangement, being found in pairs or singles. This free-living bacterium has a single replicon and is characterized by having two membranes, which is typical of gram-negative bacteria. The organism's ability to move and its metabolic versatility allow it to inhabit diverse environments, although specific habitats are not detailed. The ecological role of Methylorubrum extorquens DM4 is significant, as its methylotrophic capabilities contribute to the carbon cycle, particularly in environments rich in methanol or other methylated compounds. By metabolizing these substrates, it plays a role in the degradation of organic materials and contributes to the overall ecosystem dynamics. The accession number for this strain is NC_012989.1, which can be useful for further genomic studies or comparative analysis with related methylotrophic bacteria.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum extorquens
StrainDM4

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum extorquens DM4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative aerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum extorquens DM4


Gene Summary

Adenine Count

7178 bp

Thymine Count

6812 bp

Guanine Count

12476 bp

Cytosine Count

12113 bp

Genome Length

38579 bp

Protein-coding Genes

38 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinMETD_RS28135Not AvailablePositive20799 - 2109810466.4
mobf family relaxaseMETD_RS28495Not AvailablePositive21119 - 24472119599.0
hypothetical proteinMETD_RS30850Not AvailablePositive24622 - 2493311844.2
endonuclease/exonuclease/phosphatase family proteinMETD_RS28145Not AvailablePositive25251 - 2630338990.0
arsenic transporterMETD_RS28150Not AvailableNegative26456 - 2775145576.4
arsenate reductase (glutaredoxin)METD_RS28155Not AvailableNegative27786 - 2821115288.6
arsenate reductase arscMETD_RS28160Not AvailableNegative28211 - 2873818841.2
arsr/smtb family transcription factorMETD_RS28165Not AvailableNegative28731 - 2909012337.8
arsenical resistance protein arshMETD_RS28170Not AvailablePositive29141 - 2988728256.8
hypothetical proteinMETD_RS31220Not AvailableNegative30737 - 309527880.27

Displaying genes 21 – 30 of 38 in total

Metabolites

1715 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 1715 metabolites

Health Effects

No health effects information available for this bacterium.