Rhodopseudomonas palustris TIE-1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris TIE-1 is a gram-negative, bacilli-shaped bacterium found primarily in soil. This microorganism is classified as a photolithoautotroph, utilizing light energy to convert inorganic substances into organic compounds, which allows it to thrive in various environments. R. palustris TIE-1 exhibits a facultative oxygen requirement, enabling it to adapt to both aerobic and anaerobic conditions. The bacterium is characterized by its single-cell arrangement and possesses flagella, facilitating mobility. The optimal growth temperature for R. palustrudis TIE-1 is around 25°C, placing it within the mesophilic temperature range. It possesses a single replicon and is surrounded by two membranes, typical of gram-negative bacteria. R. palustris TIE-1 is free-living and does not exhibit pathogenicity, making it a non-threatening organism in its natural habitat. The presence of this bacterium in soil ecosystems suggests its potential role in nutrient cycling and organic matter decomposition. In summary, R. palustris TIE-1 exemplifies a versatile soil bacterium capable of harnessing light energy for growth and survival. Its adaptability to different oxygen levels and ability to thrive in mesophilic conditions highlight its ecological significance, particularly in soil health and fertility. The characteristics of R. palustris TIE-1 underscore its potential contributions to biogeochemical cycles within terrestrial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
StrainTIE-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodopseudomonas palustris TIE-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature25
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotolithoautotroph
PathogenicityNo

Genome Summary

Rhodopseudomonas palustris TIE-1, complete sequence.

Gene Summary

Adenine Count

1008103 bp

Thymine Count

1010364 bp

Guanine Count

1866123 bp

Cytosine Count

1859451 bp

Genome Length

5744041 bp

Protein-coding Genes

5229 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna pyrophosphohydrolaseRPAL_RS00850A8HRT0Positive183914 - 18443519949.6
f0f1 atp synthase subunit epsilonRPAL_RS00855Q6NDD3Negative184618 - 18502514259.0
f0f1 atp synthase subunit betaRPAL_RS00860Q6NDD2Negative185139 - 18656950719.5
f0f1 atp synthase subunit gammaRPAL_RS00865Q6NDD1Negative186641 - 18751631935.8
f0f1 atp synthase subunit alphaRPAL_RS00870Q6NDD0Negative187660 - 18919255180.6
f0f1 atp synthase subunit deltaRPAL_RS00875Q6NDC9Negative189192 - 18975219514.8
septal ring lytic transglycosylase rlpa family proteinRPAL_RS00880Not AvailablePositive190456 - 19092616328.5
primosomal protein n'RPAL_RS00885P05445Negative191082 - 19329280945.7
tyrosine recombinase xercRPAL_RS00890Q89X68Positive193494 - 19446535006.6
duf4337 domain-containing proteinRPAL_RS00895Not AvailablePositive194606 - 19519621073.2

Displaying genes 351 – 360 of 5374 in total

Metabolites

474 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 474 metabolites

Health Effects

No health effects information available for this bacterium.