Rhodopseudomonas palustris TIE-1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris TIE-1 is a gram-negative, bacilli-shaped bacterium found primarily in soil. This microorganism is classified as a photolithoautotroph, utilizing light energy to convert inorganic substances into organic compounds, which allows it to thrive in various environments. R. palustris TIE-1 exhibits a facultative oxygen requirement, enabling it to adapt to both aerobic and anaerobic conditions. The bacterium is characterized by its single-cell arrangement and possesses flagella, facilitating mobility. The optimal growth temperature for R. palustrudis TIE-1 is around 25°C, placing it within the mesophilic temperature range. It possesses a single replicon and is surrounded by two membranes, typical of gram-negative bacteria. R. palustris TIE-1 is free-living and does not exhibit pathogenicity, making it a non-threatening organism in its natural habitat. The presence of this bacterium in soil ecosystems suggests its potential role in nutrient cycling and organic matter decomposition. In summary, R. palustris TIE-1 exemplifies a versatile soil bacterium capable of harnessing light energy for growth and survival. Its adaptability to different oxygen levels and ability to thrive in mesophilic conditions highlight its ecological significance, particularly in soil health and fertility. The characteristics of R. palustris TIE-1 underscore its potential contributions to biogeochemical cycles within terrestrial ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
StrainTIE-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodopseudomonas palustris TIE-1
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature25
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotolithoautotroph
PathogenicityNo

Genome Summary

Rhodopseudomonas palustris TIE-1, complete sequence.

Gene Summary

Adenine Count

1008103 bp

Thymine Count

1010364 bp

Guanine Count

1866123 bp

Cytosine Count

1859451 bp

Genome Length

5744041 bp

Protein-coding Genes

5229 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter small permeaseRPAL_RS09860Not AvailablePositive2146337 - 214683118991.6
trap transporter large permeaseRPAL_RS09865Not AvailablePositive2146841 - 214814545738.1
duf3237 domain-containing proteinRPAL_RS09870B3Q9N8Positive2148312 - 214877317009.6
crotonase/enoyl-coa hydratase family proteinRPAL_RS09875Q5LLW6Positive2149101 - 214987727555.4
feruloyl-coa synthaseRPAL_RS09880Not AvailablePositive2149889 - 215178468053.8
thioesterase family proteinRPAL_RS09885P56653Positive2152023 - 215244215869.1
abc transporter substrate-binding proteinRPAL_RS09890Not AvailablePositive2152522 - 215367940896.3
ggdef domain-containing proteinRPAL_RS09895P54595Positive2153995 - 215484929895.3
abc transporter atp-binding proteinRPAL_RS09900P0A192Negative2154787 - 215550625343.0
abc transporter permease subunitRPAL_RS09905Not AvailableNegative2155503 - 215727562728.9

Displaying genes 2111 – 2120 of 5374 in total

Metabolites

474 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 474 metabolites

Health Effects

No health effects information available for this bacterium.