Rhodopseudomonas palustris TIE-1

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Rhodopseudomonas

Description

Rhodopseudomonas palustris are phototrophic, purple non-sulfur bacteria commonly found in soils and water. They fix carbon dioxide and nitrogen, produce hydrogen, and degrade diverse biomass-associated aromatic compounds under anaerobic (phototrophic) and aerobic (heterotrophic) conditions. Against the background of general metabolic versatility of the R. palustris species there is considerable strain-to-strain diversity. Strain TIE-1, a genetically tractable bacterium, was isolated from an iron-rich mat from School Street Marsh in Woods Hole, USA. It is able to couple the oxidation of ferrous iron [Fe(II)] to reductive CO(2) fixation by using light energy, a form of photosynthesis that may be very old. The final product of Fe(II) oxidation accumulates exclusively outside the cell in the form of Fe(III) precipitates. Under anaerobic conditions, TIE-1 grows photoautotrophically with Fe(II), H2, or thiosulfate as the electron donor and photoheterotrophically with a variety of organic carbon sources; it also grows chemoheterotrophically in the dark. Phototrophically grown cells contain lamellar intracytoplasmic membranes (adapted from PubMed 16085840). (HAMAP: RHOPT)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusRhodopseudomonas
SpeciesRhodopseudomonas palustris
StrainTIE-1

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhodopseudomonas palustris TIE-1
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature25
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotolithoautotroph
PathogenicityNo

Genome Summary

Rhodopseudomonas palustris TIE-1

Accession NumberNC_011004.1

Gene Summary

Adenine Count

1008103 bp

Thymine Count

1010364 bp

Guanine Count

1866123 bp

Cytosine Count

1859451 bp

Genome Length

5744041 bp

Protein-coding Genes

5229 genes

Non-Coding Genes

145 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
helix-turn-helix domain-containing proteinRPAL_RS03285Q21PW4+700981 - 70160722624.3
hypothetical proteinRPAL_RS03290Not Available+701600 - 7018458756.56
Hypothetical proteinRPAL_RS03295Not Available+701838 - 70248823913.4
hypothetical proteinRPAL_RS03300Not Available+702707 - 70309914933.5
hypothetical proteinRPAL_RS03305Not Available+703103 - 7033157773.38
Hypothetical proteinRPAL_RS03310Not Available+703312 - 7035398169.47
hypothetical proteinRPAL_RS03315Not Available+703542 - 7037427629.11
winged helix-turn-helix domain-containing proteinRPAL_RS03320Not Available+703739 - 70416716040.6
MethyltransferaseRPAL_RS27580Not Available+704164 - 70491627672.8
Hypothetical proteinRPAL_RS27585Not Available+704913 - 70552122072.4

Displaying genes 11 – 20 of 5374 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

379 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 379 metabolites