Methylorubrum populi BJ001

Gram-negativeRodNon-motileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Methylobacteriaceae

Genus

Methylorubrum

Description

Methylorubrum populi BJ001 is a Gram-negative, mesophilic, rod-shaped bacterium that thrives in host-associated habitats. As a methylotroph, it utilizes methanol and other one-carbon compounds as its primary energy source, enabling it to occupy ecological niches where these substrates are available. This organism is classified as an aerobe, requiring oxygen for its metabolic processes. Methylorubrum populi BJ001 exhibits a specific cell arrangement, typically found in pairs or singles, and is characterized by a distinctive two-membrane structure. Its genetic makeup includes three replicons, which may contribute to its adaptability and metabolic versatility. Despite having flagella, Methylorubrum populi BJ001 is non-motile, indicating that it does not move independently but may rely on environmental factors for dispersion. The optimal growth temperature for Methylorubrum populi BJ001 is 20°C, placing it within the mesophilic temperature range where it can thrive. The organism is free-living, suggesting that it can exist independently in its environment, potentially playing a role in the cycling of carbon compounds. In ecological contexts, the ability of Methylorubrum populi BJ001 to utilize one-carbon compounds positions it as a significant player in carbon cycling, particularly in environments rich in organic matter. Its presence indicates a potential for enhancing the degradation of methanol and similar compounds, contributing to nutrient recycling and ecosystem health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylorubrum
SpeciesMethylorubrum populi
StrainBJ001

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Methylorubrum populi BJ001
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature20
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceMethylotroph
PathogenicityNot Available

Genome Summary

Methylorubrum populi BJ001, complete sequence.

Gene Summary

Adenine Count

889169 bp

Thymine Count

886338 bp

Guanine Count

2008454 bp

Cytosine Count

2016480 bp

Genome Length

5800441 bp

Protein-coding Genes

5390 genes

Non-Coding Genes

101 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
LysozymeMPOP_RS07090Not AvailableNegative1529628 - 153025722667.2
Hypothetical proteinMPOP_RS07095Not AvailableNegative1530304 - 153138637659.2
Tail proteinMPOP_RS07100Not AvailableNegative1531413 - 1535315136958.0
Gta-like proteinMPOP_RS07105Not AvailableNegative1535342 - 153580016252.4
Minor tail proteinMPOP_RS07110Not AvailableNegative1535808 - 153670131181.8
Tail proteinMPOP_RS07115Not AvailableNegative1536712 - 153735323195.5
Putative tail length tape measure protein precursorMPOP_RS07120Not AvailableNegative1537365 - 153799120987.2
phage tail assembly chaperoneMPOP_RS07125Not AvailableNegative1537978 - 15382208620.19
gene transfer agent family proteinMPOP_RS07130Not AvailableNegative1538217 - 153854310814.1
Gene transfer aget (gta) orfg9-like phage major tail proteinMPOP_RS07135Not AvailableNegative1538546 - 153895614274.9

Displaying genes 1 – 10 of 5547 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1717 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00005992,5-dihydroxypyridineC5H5NO2Chemical structure of 2,5-dihydroxypyridineNot available
Average111.1Da
Monoisotopic111.0320284Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1717 metabolites

Health Effects

No health effects information available for this bacterium.