Shewanella woodyi ATCC 51908

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella woodyi ATCC 51908 is a facultatively anaerobic, Gram-negative bacterium characterized by its bacilli shape and mobility, facilitated by the presence of flagella. It thrives as a heterotroph, utilizing organic compounds as its energy source. This organism is nonsporulating and has a single replicon, indicative of its genomic structure. The optimal growth temperature for Shewanella woodyi is 25°C, placing it within the mesophilic temperature range. It can be found in various habitats, reflecting its adaptability and ecological versatility. The cell arrangement of Shewanella woodyi typically occurs in pairs or as singles, which may influence its interactions with other microorganisms and its environment. Shewanella woodyi exhibits a free-living biotic relationship, suggesting it plays a role in nutrient cycling and may participate in the degradation of organic materials in its habitat. Despite its nonpathogenic status in many contexts, the potential pathogenicity of this organism indicates that it could be of interest in medical microbiology, especially in relation to infections or diseases under certain conditions. Overall, the ecological role of Shewanella woodyi ATCC 51908 as a heterotrophic, free-living bacterium highlights its significance in various environments, particularly in processes such as bioremediation or nutrient recycling. Its adaptability to different conditions underscores the complexity of microbial communities and their interactions within ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella woodyi
StrainATCC 51908

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella woodyi ATCC 51908
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityYes

Genome Summary

Shewanella woodyi ATCC 51908


Gene Summary

Adenine Count

1666527 bp

Thymine Count

1675046 bp

Guanine Count

1293006 bp

Cytosine Count

1300824 bp

Genome Length

5935403 bp

Protein-coding Genes

4937 genes

Non-Coding Genes

161 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaSWOO_RS00005Not AvailablePositive397 - 178552213.4
dna polymerase iii subunit betaSWOO_RS00010Not AvailablePositive1805 - 290541073.4
dna replication/repair protein recfSWOO_RS00015Not AvailablePositive3127 - 422441261.7
dna topoisomerase (atp-hydrolyzing) subunit bSWOO_RS00020Not AvailablePositive4226 - 664390044.9
mbnh family di-heme enzymeSWOO_RS00025Not AvailableNegative7093 - 828044317.3
mbnp family copper-binding proteinSWOO_RS25345Not AvailableNegative8277 - 898127086.2
choice-of-anchor b family proteinSWOO_RS00035Not AvailablePositive9178 - 1191397996.0
5-oxoprolinase subunit pxpaSWOO_RS00040Not AvailableNegative11944 - 1268426758.2
biotin-dependent carboxyltransferase family proteinSWOO_RS00045Not AvailableNegative12710 - 1365134314.1
5-oxoprolinase subunit pxpbSWOO_RS00050Not AvailableNegative13648 - 1432825301.2

Displaying genes 1 – 10 of 5098 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1868 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1868 metabolites

Health Effects

No health effects information available for this bacterium.