Candidatus Vesicomyosocius okutanii

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Family

Candidatus Pseudothioglobaceae

Genus

Candidatus Vesicomyidisocius

Description

Candidatus Vesicomyosocius okutanii is a bacterium characterized by a single replicon, indicating a streamlined genomic structure. The organism is cataloged under the accession NC_009465.1, which provides a reference for its genetic information. This bacterium is notable for its ecological niche, often associated with marine environments, specifically in symbiotic relationships with marine invertebrates. The presence of only one replicon suggests that Candidatus Vesicomyosocius okutanii may exhibit a reduced genome size, which is common in symbiotic bacteria that have evolved to rely on their hosts for certain metabolic functions. This adaptation can enhance the efficiency of nutrient acquisition and energy production within their host organisms. Ecologically, the association of Candidatus Vesicomyosocius okutanii with marine invertebrates highlights its potential role in the nutrient cycling within these ecosystems. By participating in symbiotic relationships, this bacterium may contribute to the overall health and functioning of its host, which can, in turn, affect broader marine community dynamics. Understanding such symbiotic relationships is crucial for insights into the evolutionary adaptations of microorganisms in specialized environments.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Candidatus Vesicomyosocius okutanii


Gene Summary

Adenine Count

351378 bp

Thymine Count

347827 bp

Guanine Count

161297 bp

Cytosine Count

161652 bp

Genome Length

1022154 bp

Protein-coding Genes

951 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaCOSY_RS00005A0KEC3Positive1 - 129348984.6
dna polymerase iii subunit betaCOSY_RS00010Q9I7C4Positive1507 - 261042600.3
dna topoisomerase (atp-hydrolyzing) subunit bCOSY_RS00015P13364Positive2711 - 512891730.0
phosphoribulokinaseCOSY_RS00020P37100Positive5149 - 602733402.8
leucine--trna ligaseCOSY_RS00025A5CY09Negative6084 - 853195153.9
dihydroorotate dehydrogenaseCOSY_RS00030A5G3H0Negative8528 - 950535094.3
dethiobiotin synthaseCOSY_RS00035A5CY11Positive9545 - 1019523635.1
stringent starvation protein bCOSY_RS00040Not AvailableNegative10184 - 1052212738.6
glutathione s-transferase n-terminal domain-containing proteinCOSY_RS00045P0ACA5Negative10519 - 1115424365.7
cytochrome c1COSY_RS00050O31216Negative11193 - 1187926429.1

Displaying genes 1 – 10 of 993 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

79 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da

Displaying 1–10 of 79 metabolites

Health Effects

No health effects information available for this bacterium.