Verminephrobacter eiseniae EF01-2

Gram-negativerod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Verminephrobacter

Description

Verminephrobacter eiseniae EF01-2 is a Gram-negative, rod-shaped bacterium that exhibits mesophilic characteristics, thriving in moderate temperature environments. This organism is classified as an organotroph and chemotroph, indicating its ability to utilize organic compounds as an energy source. V. eiseniae is symbiotic, suggesting a mutualistic relationship with its host, which is likely to play a role in the ecological dynamics of its habitat. The bacterium possesses two replicons, which may contribute to its genetic diversity and adaptability within its host-associated environment. Additionally, V. eiseniae has a double membrane structure, typical of Gram-negative bacteria, which may influence its interactions with the host and its ability to withstand various environmental stressors. Notably, V. eiseniae is not pathogenic, indicating that it does not cause disease in its host. This non-pathogenic nature is significant in understanding its role in the ecosystem, as it may contribute to the health and stability of the host population. The two accession numbers, NC_008771.1 and NC_008786.1, provide references for its genetic and genomic data, allowing for further study and exploration of its biological functions. In summary, Verminephrobacter eiseniae EF01-2 exemplifies a symbiotic relationship with its host, utilizing organic compounds for energy while contributing to the ecological balance, underscoring the importance of such microorganisms in maintaining host health and ecosystem integrity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVerminephrobacter
SpeciesVerminephrobacter eiseniae
StrainEF01-2

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNo

Genome Summary

Verminephrobacter eiseniae EF01-2, complete sequence.

Gene Summary

Adenine Count

968620 bp

Thymine Count

964206 bp

Guanine Count

1814980 bp

Cytosine Count

1818943 bp

Genome Length

5566749 bp

Protein-coding Genes

5230 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
50s ribosomal protein l3 n(5)-glutamine methyltransferaseVEIS_RS01385Q63SZ9Positive308373 - 30926031413.7
abc-f family atp-binding cassette domain-containing proteinVEIS_RS01390A0A0H2VBH0Positive309260 - 31128174268.1
hypothetical proteinVEIS_RS01395Not AvailableNegative311539 - 31238431454.8
is5-like element isvei5 family transposaseVEIS_RS01400Not AvailablePositive312438 - 31392555050.6
aaa family atpaseVEIS_RS01405Not AvailableNegative313879 - 31501542671.9
voc family proteinVEIS_RS01410Not AvailableNegative315385 - 31629332518.7
is110 family transposaseVEIS_RS01415Not AvailablePositive316524 - 31747434218.1
excinuclease abc subunit uvraVEIS_RS01420Q9JZP1Negative317548 - 320586110133.0
lysr substrate-binding domain-containing proteinVEIS_RS01425Q9X5P2Negative320729 - 32163732990.3
gmc family oxidoreductaseVEIS_RS01430Not AvailableNegative321699 - 32334259769.6

Displaying genes 291 – 300 of 5334 in total

Metabolites

2071 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 2071 metabolites

Health Effects

No health effects information available for this bacterium.