Verminephrobacter eiseniae EF01-2

Gram-negativerod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Verminephrobacter

Description

Verminephrobacter eiseniae EF01-2 is a Gram-negative, rod-shaped bacterium that exhibits mesophilic characteristics, thriving in moderate temperature environments. This organism is classified as an organotroph and chemotroph, indicating its ability to utilize organic compounds as an energy source. V. eiseniae is symbiotic, suggesting a mutualistic relationship with its host, which is likely to play a role in the ecological dynamics of its habitat. The bacterium possesses two replicons, which may contribute to its genetic diversity and adaptability within its host-associated environment. Additionally, V. eiseniae has a double membrane structure, typical of Gram-negative bacteria, which may influence its interactions with the host and its ability to withstand various environmental stressors. Notably, V. eiseniae is not pathogenic, indicating that it does not cause disease in its host. This non-pathogenic nature is significant in understanding its role in the ecosystem, as it may contribute to the health and stability of the host population. The two accession numbers, NC_008771.1 and NC_008786.1, provide references for its genetic and genomic data, allowing for further study and exploration of its biological functions. In summary, Verminephrobacter eiseniae EF01-2 exemplifies a symbiotic relationship with its host, utilizing organic compounds for energy while contributing to the ecological balance, underscoring the importance of such microorganisms in maintaining host health and ecosystem integrity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVerminephrobacter
SpeciesVerminephrobacter eiseniae
StrainEF01-2

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNo

Genome Summary

Verminephrobacter eiseniae EF01-2


Gene Summary

Adenine Count

6439 bp

Thymine Count

6473 bp

Guanine Count

9125 bp

Cytosine Count

9157 bp

Genome Length

31194 bp

Protein-coding Genes

45 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaVEIS_RS00005A2SBM4Positive493 - 194454010.7
dna polymerase iii subunit betaVEIS_RS00010Q9I7C4Positive2040 - 315840870.6
dna topoisomerase (atp-hydrolyzing) subunit bVEIS_RS00015P0A2I4Positive3321 - 592794914.4
mobile mystery protein bVEIS_RS00025Not AvailableNegative7315 - 790522259.3
mobile mystery protein aVEIS_RS00030Not AvailableNegative7896 - 835717560.1
tote conflict system archaeo-eukaryotic primase domain-containing proteinVEIS_RS00035Q5UQ46Positive8634 - 1103088874.0
lysr family transcriptional regulatorVEIS_RS00040Q8VWE6Positive11421 - 1231732044.2
xanthine dehydrogenase accessory protein xdhcVEIS_RS00045Not AvailableNegative12346 - 1314927770.0
mfs transporterVEIS_RS00050Not AvailablePositive13414 - 1499755989.1
uroporphyrinogen decarboxylaseVEIS_RS00055A1WDU6Positive15099 - 1621139740.7

Displaying genes 1 – 10 of 5334 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1789 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 1789 metabolites

Health Effects

No health effects information available for this bacterium.