Verminephrobacter eiseniae EF01-2

Gram-negativerod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Verminephrobacter

Description

Verminephrobacter eiseniae EF01-2 is a Gram-negative, rod-shaped bacterium that exhibits mesophilic characteristics, thriving in moderate temperature environments. This organism is classified as an organotroph and chemotroph, indicating its ability to utilize organic compounds as an energy source. V. eiseniae is symbiotic, suggesting a mutualistic relationship with its host, which is likely to play a role in the ecological dynamics of its habitat. The bacterium possesses two replicons, which may contribute to its genetic diversity and adaptability within its host-associated environment. Additionally, V. eiseniae has a double membrane structure, typical of Gram-negative bacteria, which may influence its interactions with the host and its ability to withstand various environmental stressors. Notably, V. eiseniae is not pathogenic, indicating that it does not cause disease in its host. This non-pathogenic nature is significant in understanding its role in the ecosystem, as it may contribute to the health and stability of the host population. The two accession numbers, NC_008771.1 and NC_008786.1, provide references for its genetic and genomic data, allowing for further study and exploration of its biological functions. In summary, Verminephrobacter eiseniae EF01-2 exemplifies a symbiotic relationship with its host, utilizing organic compounds for energy while contributing to the ecological balance, underscoring the importance of such microorganisms in maintaining host health and ecosystem integrity.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVerminephrobacter
SpeciesVerminephrobacter eiseniae
StrainEF01-2

Profile

Physiology
Gram staining propertiesNegative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceorganotroph; chemotroph
PathogenicityNo

Genome Summary

Verminephrobacter eiseniae EF01-2, complete sequence.

Gene Summary

Adenine Count

968620 bp

Thymine Count

964206 bp

Guanine Count

1814980 bp

Cytosine Count

1818943 bp

Genome Length

5566749 bp

Protein-coding Genes

5230 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf1446 domain-containing proteinVEIS_RS30515Not AvailablePositive2731659 - 27317874572.59
tripartite tricarboxylate transporter substrate-binding proteinVEIS_RS11835Not AvailablePositive2731893 - 273361361094.3
mbl fold metallo-hydrolaseVEIS_RS11840Not AvailableNegative2733801 - 273491641758.7
yafy family proteinVEIS_RS11845Not AvailablePositive2735262 - 273616133646.3
duf262 domain-containing proteinVEIS_RS27680Not AvailablePositive2736180 - 273667718616.8
type i restriction-modification system subunit mVEIS_RS11855P10484Positive2736727 - 273830758307.6
virulence rhum family proteinVEIS_RS11860Not AvailablePositive2738304 - 273930837858.0
restriction endonuclease subunit sVEIS_RS11865P71344Positive2739305 - 274058547614.0
type i restriction endonuclease subunit rVEIS_RS11870P10486Positive2740582 - 2743632115208.0
mfs transporterVEIS_RS11875Not AvailableNegative2744008 - 274526445177.1

Displaying genes 2541 – 2550 of 5334 in total

Metabolites

2071 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da

Displaying 1–10 of 2071 metabolites

Health Effects

No health effects information available for this bacterium.