Acidovorax sp. JS42

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Acidovorax

Description

Acidovorax sp. JS42 is a Gram-negative, aerobic bacterium characterized by its bacilli shape. It thrives in terrestrial habitats and operates optimally within a mesophilic temperature range. Notably, this species possesses two membranes and three replicons, which is indicative of its complex cellular structure. Unlike some bacterial species, Acidovorax sp. JS42 is non-motile, despite the presence of flagella. This suggests that it may rely on environmental factors for movement rather than active locomotion. Additionally, it is a free-living organism, which means it does not depend on host organisms for survival or reproduction, and it does not exhibit pathogenicity. The bacterium is also non-sporulating, indicating that it does not form spores as a means of survival under unfavorable conditions. This trait may influence its ecological role and interactions with other microorganisms in its terrestrial environment. The insights provided by these traits suggest that Acidovorax sp. JS42 likely plays a significant role in soil ecology, particularly in nutrient cycling, due to its aerobic nature and free-living lifestyle. Its non-pathogenic status further emphasizes its potential as a beneficial microorganism in soil ecosystems, potentially contributing to soil health and fertility. The accession numbers NC_008765.1, NC_008766.1, and NC_008782.1 provide avenues for further research into its genetic and metabolic pathways, which could elucidate its ecological functions in greater detail.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAcidovorax
SpeciesAcidovorax sp. JS42
StrainJS42

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Acidovorax sp. JS42
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Acidovorax sp. JS42 plasmid pAOVO02, complete sequence.

Gene Summary

Adenine Count

11862 bp

Thymine Count

10666 bp

Guanine Count

20666 bp

Cytosine Count

20415 bp

Genome Length

63609 bp

Protein-coding Genes

72 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nitronate monooxygenaseAJS_RS19075Not AvailablePositive4076228 - 407770652297.3
plp-dependent aminotransferase family proteinAJS_RS19080Not AvailableNegative4077756 - 407921352944.2
lyse family translocatorAJS_RS19085Not AvailablePositive4079358 - 407995721233.7
dmt family transporterAJS_RS19090Not AvailablePositive4080026 - 408097032880.2
plp-dependent aminotransferase family proteinAJS_RS19095Not AvailablePositive4081136 - 408231442206.9
phzf family phenazine biosynthesis proteinAJS_RS19100Not AvailablePositive4082428 - 408330330677.7
threonine dehydrataseAJS_RS19105Not AvailablePositive4083300 - 408427434376.2
cyclase family proteinAJS_RS19110Not AvailablePositive4084452 - 408554039718.4
diguanylate cyclaseAJS_RS19115Not AvailablePositive4085574 - 408674942158.6
sdr family oxidoreductaseAJS_RS19120Not AvailablePositive4087098 - 408821940835.0

Displaying genes 3961 – 3970 of 4386 in total

Metabolites

1736 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1736 metabolites

Health Effects

No health effects information available for this bacterium.