Acidovorax sp. JS42

Gram-negativeBacilliNon-motileAerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Acidovorax

Description

Acidovorax sp. JS42 is a Gram-negative, aerobic bacterium characterized by its bacilli shape. It thrives in terrestrial habitats and operates optimally within a mesophilic temperature range. Notably, this species possesses two membranes and three replicons, which is indicative of its complex cellular structure. Unlike some bacterial species, Acidovorax sp. JS42 is non-motile, despite the presence of flagella. This suggests that it may rely on environmental factors for movement rather than active locomotion. Additionally, it is a free-living organism, which means it does not depend on host organisms for survival or reproduction, and it does not exhibit pathogenicity. The bacterium is also non-sporulating, indicating that it does not form spores as a means of survival under unfavorable conditions. This trait may influence its ecological role and interactions with other microorganisms in its terrestrial environment. The insights provided by these traits suggest that Acidovorax sp. JS42 likely plays a significant role in soil ecology, particularly in nutrient cycling, due to its aerobic nature and free-living lifestyle. Its non-pathogenic status further emphasizes its potential as a beneficial microorganism in soil ecosystems, potentially contributing to soil health and fertility. The accession numbers NC_008765.1, NC_008766.1, and NC_008782.1 provide avenues for further research into its genetic and metabolic pathways, which could elucidate its ecological functions in greater detail.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusAcidovorax
SpeciesAcidovorax sp. JS42
StrainJS42

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Acidovorax sp. JS42
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Acidovorax sp. JS42


Gene Summary

Adenine Count

751982 bp

Thymine Count

752956 bp

Guanine Count

1473867 bp

Cytosine Count

1470051 bp

Genome Length

4448856 bp

Protein-coding Genes

4162 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zincin-like metallopeptidase domain-containing proteinAJS_RS21145Not AvailablePositive4 - 4746173347.0
recombinase family proteinAJS_RS21150Not AvailableNegative5044 - 561920286.3
type ii toxin-antitoxin system yafq family toxinAJS_RS21155Not AvailableNegative5746 - 59949271.98
hypothetical proteinAJS_RS22225Not AvailablePositive6137 - 63558130.85
dna cytosine methyltransferaseAJS_RS21160Not AvailablePositive6352 - 730834803.8
ngomiv family type ii restriction endonucleaseAJS_RS21165Not AvailablePositive7308 - 817130783.6
hypothetical proteinAJS_RS22665Not AvailablePositive8168 - 83415885.08
hypothetical proteinAJS_RS21170Not AvailablePositive8338 - 85447496.54
hypothetical proteinAJS_RS21175Not AvailableNegative8608 - 88418294.83
helix-turn-helix domain-containing proteinAJS_RS22230Not AvailablePositive8877 - 90747116.53

Displaying genes 1 – 10 of 4386 in total

Metabolites

1786 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da

Displaying 1–10 of 1786 metabolites

Health Effects

No health effects information available for this bacterium.