Shewanella amazonensis SB2B

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella amazonensis SB2B is a Gram-negative, facultatively anaerobic bacterium characterized by its bacilli shape and mobility, facilitated by the presence of flagella. This organism typically exists in pairs or singles and is classified as a heterotroph, relying on organic compounds for energy. S. amazonensis SB2B is mesophilic, with an optimal growth temperature of 37 degrees Celsius, indicating its preference for moderate temperature conditions. The bacterium possesses a unique cellular structure, consisting of two membranes and a single replicon. It is nonsporulating and does not exhibit pathogenicity, signifying its role as a free-living organism rather than a disease-causing agent. The diverse habitat preferences of S. amazonensis SB2B highlight its ecological versatility, allowing it to thrive in multiple environments. This adaptability may contribute to its importance in biogeochemical cycles, particularly in the degradation of organic materials in various ecosystems. By metabolizing organic compounds, S. amazonensis SB2B may play a significant role in nutrient cycling and energy flow within its ecological niche, emphasizing its value in both environmental microbiology and potential biotechnological applications. The accession number for further genetic and genomic information on this strain is NC_008700.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella amazonensis
StrainSB2B

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella amazonensis SB2B
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella amazonensis SB2B


Gene Summary

Adenine Count

999899 bp

Thymine Count

998737 bp

Guanine Count

1157260 bp

Cytosine Count

1150246 bp

Genome Length

4306142 bp

Protein-coding Genes

3682 genes

Non-Coding Genes

130 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fmn-binding protein miocSAMA_RS00005Not AvailableNegative70 - 51015691.6
endonuclease/exonuclease/phosphatase family proteinSAMA_RS00010Not AvailablePositive657 - 157134140.5
s-formylglutathione hydrolaseSAMA_RS00015Not AvailableNegative1522 - 236731489.0
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseSAMA_RS00020Not AvailableNegative2377 - 351039813.1
lysr substrate-binding domain-containing proteinSAMA_RS00025Not AvailablePositive3683 - 455832549.7
hypothetical proteinSAMA_RS00030Not AvailablePositive4686 - 518618213.0
hisa/hisf-related tim barrel proteinSAMA_RS00035Not AvailablePositive5295 - 640139387.1
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeSAMA_RS00040Not AvailableNegative6502 - 786348950.5
membrane protein insertase yidcSAMA_RS00045Not AvailableNegative7951 - 957660040.1
membrane protein insertion efficiency factor yiddSAMA_RS19280Not AvailableNegative9581 - 98359481.71

Displaying genes 1 – 10 of 3812 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1869 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1869 metabolites

Health Effects

No health effects information available for this bacterium.