Shewanella amazonensis SB2B

Gram-negativeBacilliMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Alteromonadales

Family

Shewanellaceae

Genus

Shewanella

Description

Shewanella are facultatively anaerobic, Gram-negative bacteria, motile by polar flagella, rod-like, and generally associated with aquatic or marine environments. They are capable of using a variety of compounds as electron acceptors, including oxygen, iron, manganese, uranium, nitrate, nitrite, fumarate, to name but a few. This ability makes Shewanella important for bioremediation of contaminated metals and radioactive wastes. The genus Shewanella comprises 36 recognized and hundreds of uncharacterized cultivable species. Strain SB2BT was isolated from Amazonian shelf coastal muds, in intertidal sediments, off the Amapa coast of Brazil, and is a highly active reducer of iron and manganese oxides, thiosulfate and elemental sulfur. Cells are rod-shaped, 2-3 um in length and 0.4-0.7 um in diameter, Gram-negative, facultatively anaerobic, polarly flagellated. No endospores nor capsules are formed. Cells are able to grow at mesophilic temperatures, with optimal growth observed at 37 C. Denitrifies nitrate to nitrite and nitrite to N2. Exhibits cytochrome oxidase, catalase and gelatinase activity, and produces hydrogen sulfide from thiosulfate. Haemolyses sheep blood cells and does not grow at NaCl concentrations above 3%. Utilizes acetate, succinate, fumarate and citrate as sole carbon sources as well as a few carbohydrates and amino acids. Very active in the reduction of iron, manganese and sulfur compounds. (HAMAP: SHEAM)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella amazonensis
StrainSB2B

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Shewanella amazonensis SB2B
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs- Singles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityNo

Genome Summary

Shewanella amazonensis SB2B


Gene Summary

Adenine Count

999899 bp

Thymine Count

998737 bp

Guanine Count

1157260 bp

Cytosine Count

1150246 bp

Genome Length

4306142 bp

Protein-coding Genes

3682 genes

Non-Coding Genes

130 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
fmn-binding protein miocSAMA_RS00005Not Available-70 - 51015691.6
endonuclease/exonuclease/phosphatase family proteinSAMA_RS00010Not Available+657 - 157134140.5
s-formylglutathione hydrolaseSAMA_RS00015Not Available-1522 - 236731489.0
s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenaseSAMA_RS00020Not Available-2377 - 351039813.1
lysr substrate-binding domain-containing proteinSAMA_RS00025Not Available+3683 - 455832549.7
hypothetical proteinSAMA_RS00030Not Available+4686 - 518618213.0
hisa/hisf-related tim barrel proteinSAMA_RS00035Not Available+5295 - 640139387.1
trna uridine-5-carboxymethylaminomethyl(34) synthesis gtpase mnmeSAMA_RS00040Not Available-6502 - 786348950.5
membrane protein insertase yidcSAMA_RS00045Not Available-7951 - 957660040.1
membrane protein insertion efficiency factor yiddSAMA_RS19280Not Available-9581 - 98359481.71

Displaying genes 1 – 10 of 3812 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1830 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 1830 metabolites