Synechococcus sp. CC9311

Gram-negativeCocciMotileFacultative

Kingdom

Bacillati

Phylum

Cyanobacteriota

Class

Cyanophyceae

Order

Synechococcales

Family

Synechococcaceae

Genus

Synechococcus

Description

Synechococcus sp. CC9311 is a free-living, photosynthetic cyanobacterium classified as a photoautotroph. It thrives in aquatic environments, utilizing sunlight as its primary energy source. The organism is characterized by its cocci shape and the presence of flagella, which contributes to its motility. As a Gram-negative bacterium, it possesses two membranes and a single replicon within its genome. This species is classified as facultative, indicating that it can adapt to varying oxygen conditions. It can thrive in mesophilic temperature ranges, which are generally moderate and conducive to its growth. Importantly, Synechococcus sp. CC9311 is not known to be pathogenic, reinforcing its role as a non-harmful microbial inhabitant of aquatic ecosystems. The ecological significance of Synechococcus sp. CC9311 lies in its contribution to primary production in aquatic habitats. By converting light energy into chemical energy through photosynthesis, this cyanobacterium plays a vital role in the base of the food web, supporting various marine and freshwater organisms. Its ability to thrive in diverse oxygen conditions and its free-living nature suggest that it can adapt to changing environmental conditions, making it a resilient component of aquatic ecosystems. The accession number for this organism is NC_008319.1, which provides a reference for further genomic studies and insights into its ecological functions.

Taxonomy

KingdomBacillati
PhylumCyanobacteriota
ClassCyanophyceae
OrderSynechococcales
FamilySynechococcaceae
GenusSynechococcus
SpeciesSynechococcus sp. CC9311
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeCocci
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Synechococcus sp. CC9311
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourcePhotosynthetic- Photoautotroph
PathogenicityNo

Genome Summary

Synechococcus sp. CC9311


Gene Summary

Adenine Count

618673 bp

Thymine Count

620905 bp

Guanine Count

682327 bp

Cytosine Count

684843 bp

Genome Length

2606748 bp

Protein-coding Genes

2718 genes

Non-Coding Genes

54 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna polymerase iii subunit betaSYNC_RS00015Not AvailablePositive174 - 133140922.6
hypothetical proteinSYNC_RS00020Not AvailablePositive1348 - 214830124.0
phosphoribosylformylglycinamidine synthase subunit purlSYNC_RS00025Not AvailablePositive2185 - 451882663.9
amidophosphoribosyltransferaseSYNC_RS00030Not AvailablePositive4518 - 602354706.3
dna topoisomerase (atp-hydrolyzing) subunit aSYNC_RS00035Not AvailableNegative6024 - 848690394.2
tetratricopeptide repeat proteinSYNC_RS00040Not AvailableNegative8556 - 939530310.2
trna epoxyqueuosine(34) reductase quegSYNC_RS00045Not AvailableNegative9455 - 1042936555.5
hpsj family proteinSYNC_RS00050Not AvailablePositive10474 - 1113623773.4
duf502 domain-containing proteinSYNC_RS00055Not AvailablePositive11192 - 1194127332.4
transcription antitermination factor nusbSYNC_RS00060Not AvailablePositive11963 - 1259523452.3

Displaying genes 1 – 10 of 2772 in total

Metabolites

304 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da

Displaying 1–10 of 304 metabolites

Health Effects

No health effects information available for this bacterium.