Leifsonia xyli subsp. xyli str. CTCB07

Gram-negativeBacilliNon-motileAerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Microbacteriaceae

Genus

Leifsonia

Description

Leifsonia xyli subsp. xyli str. CTCB07 is a Gram-negative bacterium characterized by its bacilli shape and aerobic oxygen requirement. This strain is mesophilic, with an optimal growth temperature of 20°C, indicating its preference for moderate temperature ranges. L. xyli subsp. xyli str. CTCB07 is notable for having a single replicon and a single membrane, which is typical for many bacteria in its classification. It is classified as free-living, suggesting that it does not rely on a host organism for survival, and it is not known to cause disease, indicating a lack of pathogenicity. This bacterium's habitat is associated with hosts, which may imply a role in specific ecological niches, possibly contributing to nutrient cycling or other interactions within its environment. The absence of mobility suggests that it relies on passive means for dispersion or colonization, which can limit its spread but may also allow it to establish stable populations in suitable habitats. From an ecological perspective, L. xyli subsp. xyli str. CTCB07's traits may contribute to its survival and function in the environment, highlighting its role in maintaining microbial diversity and dynamics in ecosystems where it is found. Understanding its characteristics can provide insights into the ecological roles of similar bacterial strains in their natural habitats. Accessions for this strain can be found under NC_006087.1, providing a resource for further study and characterization.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrobacteriaceae
GenusLeifsonia
SpeciesLeifsonia xyli
StrainCTCB07

Profile

Physiology
Gram staining propertiesNegative
ShapeBacilli
MobilityNo
Flagellar presenceNot Available
Number of membranes1
Ecology, Host, and Life Cycle
Oxygen requirementsAerobic
Optimal temperature20
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Leifsonia xyli subsp. xyli str. CTCB07, complete sequence.

Gene Summary

Adenine Count

418687 bp

Thymine Count

416615 bp

Guanine Count

874000 bp

Cytosine Count

874856 bp

Genome Length

2584158 bp

Protein-coding Genes

2611 genes

Non-Coding Genes

109 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
serine/threonine protein kinaseLXX_RS00120Not AvailableNegative21267 - 2298859528.5
peptidoglycan d,d-transpeptidase ftsi family proteinLXX_RS00125Not AvailableNegative22985 - 2443950958.4
ftsw/roda/spove family cell cycle proteinLXX_RS00130Not AvailableNegative24441 - 2583549966.8
pp2c family protein-serine/threonine phosphataseLXX_RS00135Not AvailableNegative25822 - 2706644544.9
fha domain-containing proteinLXX_RS00140Not AvailableNegative27070 - 2762720188.5
fhaa domain-containing proteinLXX_RS00145Not AvailableNegative27624 - 2833725864.7
Trna-leuNot AvailableNot AvailablePositive28490 - 28573Not Available
protein kinaseLXX_RS00155Not AvailablePositive29064 - 2940512718.6
lpxtg cell wall anchor domain-containing proteinLXX_RS00160Not AvailablePositive29409 - 3006522418.4
protein kinaseLXX_RS00165Not AvailableNegative30026 - 3083932045.9

Displaying genes 121 – 130 of 2720 in total

Metabolites

1714 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1714 metabolites

Health Effects

No health effects information available for this bacterium.