Escherichia coli strain GMR-RB-634

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain GMR-RB-634 is a Gram-negative, rod-shaped bacterium that exhibits mobility due to the presence of flagella. This strain is facultatively anaerobic, capable of thriving in both aerobic and anaerobic environments, and is categorized as mesophilic, with an optimal growth temperature of 37°C. GMR-RB-634 is associated with a diverse range of hosts, including various mammals such as Homo sapiens, Bos taurus, and Canis lupus familiaris, as well as non-mammalian species like Solanum lycopersicum and Apis mellifera. Its ability to inhabit multiple environments suggests a versatile ecological role. GMR-RB-634 is a free-living organism, typically found in host-associated habitats. This strain is notably pathogenic to humans and is linked to a wide array of health issues. It is implicated in urinary tract infections (UTIs), gastrointestinal infections, and can lead to severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). The extensive list of health effects associated with GMR-RB-634 includes not only infections like peritonitis and diarrhea but also conditions that can have serious consequences, such as renal failure and abortion in various hosts. The diversity of hosts and the significant health impacts associated with GMR-RB-634 emphasize its potential role in infectious disease dynamics within ecosystems. Its presence in both human and animal hosts highlights the importance of monitoring this strain in relation to public health and veterinary medicine, as well as in understanding its ecological interactions.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain GMR-RB-634

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain GMR-RB-634
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain GMR-RB-634


Gene Summary

Adenine Count

1341792 bp

Thymine Count

1354190 bp

Guanine Count

1351190 bp

Cytosine Count

1382256 bp

Genome Length

5429428 bp

Protein-coding Genes

5151 genes

Non-Coding Genes

349 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tail componentBIU72_04240Not AvailableNegative835593 - 83585510384.2
Tail componentBIU72_04245Not AvailableNegative835837 - 83625915608.4
Major tail protein vBIU72_04250Not AvailableNegative836275 - 83701525811.2
Tail componentBIU72_04255Not AvailableNegative837023 - 83741814649.9
Tail componentBIU72_04260Not AvailableNegative837415 - 83799321562.0
Head-tail joining proteinBIU72_04265Not AvailableNegative838005 - 83835812761.8
Dna packaging proteinBIU72_04270Not AvailableNegative838370 - 83876814308.9
Capsid componentBIU72_04275Not AvailableNegative838810 - 83957428311.4
Head-dna stabilization proteinBIU72_04280Not AvailableNegative839642 - 83997411572.5
Capsid componentBIU72_04285Not AvailableNegative839984 - 84130345942.4

Displaying genes 1 – 10 of 5500 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 74 in total