Escherichia coli strain SJRP/Ec42695 Cotig_84

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SJRP/Ec42695, identified by accession number MUBQ00000000.1, is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic. This strain is characterized by its ability to exist in pairs or as singles, demonstrating mobility through the presence of flagella. Its optimal growth temperature is 37°C, and it is classified as mesophilic, thriving in moderate temperature ranges. This strain is host-associated, with a wide array of potential hosts including Homo sapiens, Gallus gallus, and various other mammals, birds, and even some plants like Solanum lycopersicum. This extensive host range indicates a complex ecological role, suggesting that SJRP/Ec42695 can interact with diverse biological systems. Notably, Escherichia coli strain SJRP/Ec42695 is associated with numerous health effects, particularly in humans. It is linked to urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). The strain's pathogenicity in humans underlines its clinical relevance, as it can lead to various diseases, including septicemia and bacterial meningitis. The biotic relationship of SJRP/Ec42695 is described as free-living, which may facilitate its transmission among hosts and contribute to its role in clinical and environmental contexts. Understanding this strain's traits and interactions is crucial for addressing the health challenges it poses, particularly in the realm of foodborne illnesses and hospital-acquired infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain SJRP/Ec42695 Cotig_84

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain SJRP/Ec42695 Cotig_84
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain SJRP/Ec42695 Cotig_84


Gene Summary

Adenine Count

1425857 bp

Thymine Count

1426936 bp

Guanine Count

1454646 bp

Cytosine Count

1451584 bp

Genome Length

5759023 bp

Protein-coding Genes

5291 genes

Non-Coding Genes

581 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
AttlNot AvailableNot AvailablePositive75699 - 75713Not Available
IntegraseBZL69_00415Not AvailableNegative75787 - 7685740282.3
ExcisionaseBZL69_00420Not AvailableNegative76835 - 770538635.56
Hypothetical proteinBZL69_00425Not AvailableNegative77144 - 7745511573.0
Hypothetical proteinBZL69_00430Not AvailableNegative77388 - 775887485.71
Hypothetical proteinBZL69_00435Not AvailableNegative77601 - 7787910779.1
Orf8BZL69_00440Not AvailableNegative77879 - 7846021578.1
Hypothetical proteinBZL69_00445Not AvailableNegative78457 - 7897519198.6
Abc2BZL69_00450Not AvailableNegative79070 - 7936611385.4
Hypothetical proteinBZL69_00455Not AvailableNegative79390 - 7997721384.4

Displaying genes 1 – 10 of 5872 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 74 in total