Escherichia coli strain SJRP/Ec42695 Cotig_84

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain SJRP/Ec42695, identified by accession number MUBQ00000000.1, is a Gram-negative, rod-shaped bacterium that is facultatively anaerobic. This strain is characterized by its ability to exist in pairs or as singles, demonstrating mobility through the presence of flagella. Its optimal growth temperature is 37°C, and it is classified as mesophilic, thriving in moderate temperature ranges. This strain is host-associated, with a wide array of potential hosts including Homo sapiens, Gallus gallus, and various other mammals, birds, and even some plants like Solanum lycopersicum. This extensive host range indicates a complex ecological role, suggesting that SJRP/Ec42695 can interact with diverse biological systems. Notably, Escherichia coli strain SJRP/Ec42695 is associated with numerous health effects, particularly in humans. It is linked to urinary tract infections (UTIs), gastrointestinal infections, and severe conditions such as neonatal meningitis and hemolytic uremic syndrome (HUS). The strain's pathogenicity in humans underlines its clinical relevance, as it can lead to various diseases, including septicemia and bacterial meningitis. The biotic relationship of SJRP/Ec42695 is described as free-living, which may facilitate its transmission among hosts and contribute to its role in clinical and environmental contexts. Understanding this strain's traits and interactions is crucial for addressing the health challenges it poses, particularly in the realm of foodborne illnesses and hospital-acquired infections.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain SJRP/Ec42695 Cotig_84

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain SJRP/Ec42695 Cotig_84
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens, Gallus gallus, Bos taurus
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain SJRP/Ec42695 Cotig_84, whole genome

Gene Summary

Adenine Count

1425857 bp

Thymine Count

1426936 bp

Guanine Count

1454646 bp

Cytosine Count

1451584 bp

Genome Length

5759023 bp

Protein-coding Genes

5291 genes

Non-Coding Genes

581 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dnaa regulatory inactivator hdaBZL69_24070Not AvailableNegative4556576 - 455732228371.4
uracil permeaseBZL69_24075Not AvailableNegative4557372 - 455866145033.0
uracil phosphoribosyltransferaseBZL69_24080Not AvailableNegative4558747 - 455937322534.6
hypothetical proteinBZL69_24085Not AvailablePositive4559497 - 45596797096.96
phosphoribosylformylglycinamidine cyclo-ligaseBZL69_24090Not AvailablePositive4559698 - 456073536875.2
phosphoribosylglycinamide formyltransferaseBZL69_24095Not AvailablePositive4560735 - 456137323253.6
polyphosphate kinaseBZL69_24100Not AvailablePositive4561544 - 456361080436.1
exopolyphosphataseBZL69_24105Not AvailablePositive4563615 - 456515658139.5
sensor domain-containing phosphodiesteraseBZL69_24110Not AvailableNegative4565195 - 456743885741.9
type iii effector proteinBZL69_24115Not AvailableNegative4567675 - 456814617889.2

Displaying genes 4701 – 4710 of 5872 in total

Metabolites

4785 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000173(R)-3-Hydroxybutyric acidC4H8O3Chemical structure of (R)-3-Hydroxybutyric acid625-72-3
Average104.0473Da
Monoisotopic104.047344122Da
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da

Displaying 1–10 of 4785 metabolites

Health Effects

Health ConditionRelationReference
Gi diseaseCausesPMC11149725
UtisCausesPMC11434687
Colorectal cancerCausesPMC12198655
Pyogenic liver abscessesCausesPMC12392612
UtiCausesPMC13014981
ColibacillosisCausesPMC13255289
Enteric infectionsCausesPMC13255289
Foodborne infectionsCausesPMC13255289
Clinical mastitisCausesPMC13293316
DiarrheaCausesPMC3035056

Displaying health effects 1 – 10 of 103 in total