Pseudonocardia autotrophica strain DSM 535

rod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Pseudonocardia

Description

Pseudonocardia autotrophica strain DSM 535 is a rod-shaped bacterium characterized by its unique metabolic capabilities and taxonomic classification. This strain possesses a single replicon, which contributes to its genetic stability and may influence its adaptability in various environments. The accession number for this strain is MIGB00000000.1, which allows for its identification and retrieval of genomic data from biological databases. This information is crucial for researchers studying the genetic and phenotypic traits of Pseudonocardia autotrophica and its potential applications. Pseudonocardia species are known for their role in soil ecosystems, particularly in the degradation of complex organic compounds and the cycling of nutrients. This ecological function is significant, as it contributes to soil health and fertility, supporting plant growth and the overall functioning of terrestrial ecosystems. The specific traits of Pseudonocardia autotrophica, including its rod shape and single replicon, may further enhance its ability to thrive in its ecological niche, making it a key player in microbial communities. Understanding the characteristics of Pseudonocardia autotrophica strain DSM 535 can provide insights into the ecological roles of actinobacteria in soil environments, highlighting their importance in biogeochemical cycles and the maintenance of ecosystem balance.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusPseudonocardia
SpeciesPseudonocardia autotrophica
Strainstrain DSM 535

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudonocardia autotrophica strain DSM 535 contig00117, whole

Gene Summary

Adenine Count

991518 bp

Thymine Count

996804 bp

Guanine Count

2691302 bp

Cytosine Count

2672032 bp

Genome Length

7351656 bp

Protein-coding Genes

6853 genes

Non-Coding Genes

61 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
high-affinity zinc uptake system membrane protein znubBG845_00016Not AvailableNegative12627 - 1347528607.3
zinc import atp-binding protein znucBG845_00017Not AvailableNegative13472 - 1430229696.9
manganese abc transporter substrate-binding lipoprotein precursorBG845_00018Not AvailableNegative14299 - 1534536110.1
hth-type transcriptional repressor cytrBG845_00019Not AvailablePositive15496 - 1659939282.5
mosc domain proteinBG845_00020Not AvailablePositive16593 - 1742629692.6
trehalose-phosphate phosphataseBG845_00021Not AvailableNegative17404 - 1824028157.4
trehalose-phosphate synthaseBG845_00022Not AvailableNegative18237 - 1968854341.8
inner membrane protein yjjpBG845_00023Not AvailableNegative19741 - 2122250825.9
Trna-thrNot AvailableNot AvailablePositive21373 - 21446Not Available
putative cadmium-transporting atpaseBG845_00025Not AvailableNegative21491 - 2354269942.3

Displaying genes 31 – 40 of 6914 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.